bam_markduplicates_samtools

Samtools markduplicate SAM/BAM/CRAM file

markdupbamsamcram

Description

Samtools markduplicate SAM/BAM/CRAM file

name:type

description

pattern

Groovy Map containing sample information
e.g. [ id:'test' ]

BAM/CRAM/SAM file

*.{bam,cram,sam}

FASTA file

*.{fasta,fa}

name:type

description

pattern

Groovy Map containing sample information
e.g. [ id:'test' ]

Sorted and markduplicate BAM/CRAM/SAM file

*.{bam,cram,sam}

File containing software versions

versions.yml